In my boat, which could be different from year to year and model to model, the cockpit and swim platform speakers were wired in series. If the cockpit speakers are disconnected from the stock wiring, then the swim platform speakers won't get signal from the head unit as the circuit would be broken. I need to verify the wiring first with my meter but if all goes as expected, a shunt to connect the +/- wires (where they stock wires were disconnected from the cockpit speakers) to complete the circuit will work. But I need to verify wiring first for my scenario. If your swim speakers were on their own channels, then yes just leaving them connected would work as nothing has changed for them.
This is a series circuit:
View attachment 142377
Notice how the two speakers are connected to each other with only one +/- back to the amp/head unit. If one speaker is disconnected or removed, then the circuit is not complete and the second speaker won't work as it's not getting a signal.
Yamaha wires the speakers like this because the lower power 4 channel head units can't provide the current to drive two pairs of speakers in a parallel circuit where the current draw doubles, plus another pair (six total). Typically the head unit's built-in amp would overheat and pop a fuse or blow the outputs in the head unit requiring replacement.
Wiring them in series doubles the resistance which cuts the current draw in half so a 4 channel head unit can handle driving six speakers. But the two pairs in series have only half as much power output so they're noticeably lower volume compared to a pair running direct. You can set the fader to middle and ensure all volumes for zone 1 & 2 are equal - then listen to the speaker volumes at each location. The pair running direct will be louder and more full sounding at moderate volumes.