I dock at a finger slip, on my port side. This is my process for getting the mooring cover on:
anti pooling poles, bow cleats, close the windshield, stern cleats. *I've found the battery compartment is the best place for me to store the anti pooling poles while underway.
cover the bow, start unrolling and lay the remaining rolled up cover on the windshield. *be sure to roll the cover up neatly while removing, it makes it much easier to put back on. rolling it nicely, and then folding it over once will also allow it to fit perfectly under the bow seats.
crawl under the windshield, continue unrolling the cover. buckle and Velcro starboard side portion of cover around tower base. *do NOT velcro/bucket port side yet, but do lay cover over port side.
turn off batteries and plug in shore power. *I leave the radio on so I can't forget to turn the batteries off.
remove clean out plugs.
cover starboard corner of swim platform, make sure cover is tucked all the way under the corner.
cover port side of swim platform, again making sure the cover is tucked all the way under the corner.
buckle/velcro port side of cover while standing on dock.
check all lines and fenders are properly secured. *all fenders are tied on under the cover (except for one which hangs off the tower).
tighten port side ratchet (starboard ratchet is left as loose as possible).
The cover is a serious pain in the ass, but totally worth keeping your interior nice. My wife always wants to help put the cover on, but I honestly find it easier to do myself (unless it's windy). She usually ends up bringing all the stuff from the boat back to the car in the time it takes me to cover the boat. You just have to do it a bunch of times until you figure out your own process.