You probably have the same one I do. It seems like the design was a purposeful, and stupid, choice.
It's formed to create a V, with a kink in the center that will never sit flat against the deck, meaning it will never seal properly from the underside, and will require sealant on the outside edge to keep water out, in addition to the riser.
If you install the riser, the screws aren't needed at all, and you can keep the hatch cover in OEM condition. There's a rubber o-ring underneath, but it's decorative at best, without topside pressure to keep the hatch pressed against it for an okay seal.
The riser is THE best solution for that hatch, as you don't want to have to fiddle with screws in the event of an emergency - that's your preliminary look, before you have to pull MORE screws from the tray. The less to deal with in an emergency, the better your chances for quick recovery.
Hopefully you used some silicone on the cleanout tubes when reassembling, as some have reported water that fills the tubes will seep into the bilge if that seal is broken or nonexistent. The check valve on the tray drain and the O-rings on the cleanout plugs should keep the tubes dry, but keep that in mind for future reference